PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0236s00030.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 797aa    MW: 87619.6 Da    PI: 5.8061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0236s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000186236601355
                       HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       R+ i +++ eLrel+P+ a      K s  + Le+A++++  Lq
  Vang0236s00030.1 623 RQLIQDRIKELRELVPNgA------KCSIDSLLERAIKHMLFLQ 660
                       67799************77......777778*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-2391226IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00116603660No hitNo description
PROSITE profilePS5088810.925610659IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-5623664IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-4623664IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MNDYASILHQ TSEGQLEALV GGVVGIGGVS DGCGSSDTAN SWTAIKTASG VAEEAGWKRF  60
LQGELGEGGI VILLLFEMFY VVFIVVRWKW DKILTWEDAY YNNPDDYDSS ENKHCQKILE  120
QIGYGKFSHN ALGLAVAKMS YHAYSLGEGI VGQVAVTGKH RWICADNQVA GSGLSFEFAD  180
GWQSQFSAGI RTIAVVAVAS LGVVQLGSLN KVIEDMGFVA HIRNLFQNFS MAQCPSQIQG  240
SLKSSLSQLD ISKENLSSDV VPTGFYNAQK SMKSETADVL MSLQCSGRNY ALHSACQKMS  300
DNVAKKKGPE LYSDESSILL QSISNMMNVE HHDFEEMKPL YGRKCEEGSS GCKDVRFESE  360
NNVSSFLSDF ITDNDLICPS EKVRVDSACF PSAFLDTVVC ETDKLHCVDN NQKGVLNFTQ  420
PSDANSQHVE KSKFRTEPSY NDMSNVLNFP AGCELHEALG PSFLKGSKNF DWAAQFNQDM  480
KTVEMSDEIS TSQLTSESRP EHLLEALVAN ICHSNNDVNS ELSFCTSMQS AMASGKNHEA  540
STHNVYAINS EGYSIDQFSL VKEDKHHSLS SSSGICGVMS SKGVSSTFPS SSSGQLERSS  600
EPSKNSKKRA RPGESCRPRP RDRQLIQDRI KELRELVPNG AKCSIDSLLE RAIKHMLFLQ  660
SITKHADKLT DFGDTKSKLH HMEADILGSS SYEQGSSWAM EVGGHLKVHS ILVENLSKNG  720
QMLVEMLCEE CSHFLEIAEA IRSLGLTILK GGTKVHGEKI WICFVVEGQN NRNVHRLDIL  780
WPLVQILQSK STVYSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0236s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442967.10.0PREDICTED: transcription factor EMB1444-like
TrEMBLA0A0S3RYB50.0A0A0S3RYB5_PHAAN; Uncharacterized protein
STRINGXP_007162528.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-129conserved peptide upstream open reading frame 7