PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0236s00020.1 | ||||||||
Common Name | LR48_Vigan50s009100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 24116.8 Da PI: 5.2131 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 4.8e-39 | 5 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp +er +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a Vang0236s00020.1 5 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVSERCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQA 97 7*************************89***************************************************************** PP DUF260 93 elallkee 100 ++a+l+e+ Vang0236s00020.1 98 QVAHLREQ 105 ***99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.073 | 4 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-37 | 5 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MTGSPCGACK FLRRKCVRGC VFAPYFCHEQ GATHFAAIHK VFGASNVSKL LAHLPVSERC 60 EAAVTISYEA QARLQDPIYG CVAHIFALQQ QVVNLQAQVA HLREQAGQIY LNASATENPN 120 EKYFGKSTNF PQYLDSWFQT ENSNSASQFL PKLSTDTSTQ YYGNTDTFMD PNPIGNDDNS 180 VTVEESISFS SFEESCNSMA CDVQRQWTFY QVDNLQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-34 | 3 | 109 | 9 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-34 | 3 | 109 | 9 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0236s00020.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017442928.1 | 1e-163 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 4e-69 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A0L9T490 | 1e-162 | A0A0L9T490_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RYE2 | 1e-162 | A0A0S3RYE2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162526.1 | 1e-143 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-60 | lateral organ boundaries-domain 29 |