PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0216s00450.1
Common NameLR48_Vigan03g199400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 444aa    MW: 48115 Da    PI: 7.6475
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0216s00450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.1e-3975134261
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                       ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Vang0216s00450.1  75 PDKILRCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 134
                       7899******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2966132IPR003851Zinc finger, Dof-type
PfamPF027019.0E-3277133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.44479133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
LEELSFKVCN TITINMSQTE KDPGIRLFGR KIPVPECQIP ANSGPTENEP IVNPKPAEDN  60
TENGGSDQDK VLKKPDKILR CPRCNSLDTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR  120
NVPIGAGRRK NKHLASQYRH IIVSSNGIPA SRLETEDASG FQHVTNLESS VPFRSSADSS  180
TVLKFGPDTT LCESMDSMLN LRDDRRCVDA SSINRAEYAG EPSLCGSSVT NNSTQGNELS  240
EHKTSNWLQC YPVPPWVLTY PGWNNVSSVE AVHQSSAPMC SPYNTGPAAM QWCPTAMVAI  300
PGMCPPSIPF QVVPPSCWSG TTHWNAGTGT VSIGSNACLS PSSSTSNSCC SGNGSPTLGK  360
HARDTVFADE EKSDKCVLVP KTIRTDASNE ASKCPIRAAL SIKPDQQKKI EPKEGKDRVL  420
GASQILEANP AAISRAHAFQ ESI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0216s00450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416000.10.0PREDICTED: cyclic dof factor 2-like
TrEMBLA0A0L9U7L40.0A0A0L9U7L4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RWT80.0A0A0S3RWT8_PHAAN; Uncharacterized protein
STRINGXP_007161893.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.27e-60cycling DOF factor 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]