PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0214s00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SRS | ||||||||
Protein Properties | Length: 433aa MW: 46114.5 Da PI: 7.0983 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 212 | 1.4e-65 | 215 | 375 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls..s 93 sg+++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq ++a+a+ + s +++a+k++r ++++++s+t++s + Vang0214s00210.1 215 SGASTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAATAAVGS--SGSTSATKKPRLV-PSQTTTTSHTSTSnnT 304 7889**********************************************87777765544..5577888888876.4444444444444005 PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++t s lP +v+++a f+cvrv++vddg++e+aYq++v+igGhvfkG+LydqG+e+ Vang0214s00210.1 305 TTPPRSFDTGSshqdvsfkesLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVED 375 566778887778999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.5E-61 | 217 | 374 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.2E-27 | 219 | 261 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.2E-28 | 326 | 373 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
LSIKEATFIC GYSYKEVTPI LINTASVVAT TRRFPSDSGA FVDWSATPSA VSGRGDDLSL 60 GFNASSAAAH GGASMWPVAS RSFNHNLSPH HDIFVVAPAS SFHHHHHSDA VLSDPNNNSS 120 NATALGVNVF PLLTATPCLT PESEGIMGNI NNHRNRIQLW QPQESPQHQH ADGVLAGNHR 180 SRIQLWQEHD ESPPPQQQQQ QHPNAHVQER EGSGSGASTC QDCGNQAKKD CSHRRCRTCC 240 KSRGFDCATH VKSTWVPAAR RRERQLMAAT AAVGSSGSTS ATKKPRLVPS QTTTTSHTST 300 SNNTTTPPRS FDTGSSHQDV SFKESLPCQV RAPAEFKCVR VTAVDDGDDE YAYQAVVKIG 360 GHVFKGFLYD QGVEDKSEYP NLSELHLGGG GSDGGGRNGV SSSSPMVNPS DVYAASAGVL 420 LGDSSNYGNA IN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0214s00210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438038.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | A0A0L9VII2 | 0.0 | A0A0L9VII2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146319.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 3e-66 | Lateral root primordium (LRP) protein-related |