PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0204s00260.1

Common Name

LR48_Vigan10g024400

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 779aa MW: 84590.6 Da PI: 5.4051

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0204s00260.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.3	1.7e-13	274	334	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 + kr r+++NRe+A+ sRqRKk ++eeLeekv ++ + +L ++++ + e a+l+++v Vang0204s00260.1 274 DEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMNSIIADLSSKISYMVAENATLRQQV 334 5699*******************************************99999999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.8E-14	272	336	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.369	274	334	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.0E-11	276	334	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.6E-16	276	334	No hit	No description
Pfam	PF00170	7.9E-12	276	334	IPR004827	Basic-leucine zipper domain
CDD	cd14704	1.15E-20	277	328	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MTESMHAVEP SPEAAVLPVS DPLFDEFSTE FGSLPLLSID SLFNSDTLPF TSDLEFGMDF 60 DDNNGEFEIT FDDLDEICIP SDVEDFLLPD ACDPNNTSVL PPIDESSAKN SDSPRSDTSV 120 VSGDRSFGVS RFFNSQASDS VSEGNSCKEG SHDAADVRVS NISSPESEFC DREESSGGPV 180 SSQGSGNGGS GVCEAVNSPS PDSGSFERDI TSSHEHAVMD KGVKLEEISG CDLKRKKVSC 240 EGSATKHRRF SSSSVDTKTE KQTPSDVNAI DDDDEKRKAR LMRNRESAQL SRQRKKHYVE 300 ELEEKVRSMN SIIADLSSKI SYMVAENATL RQQVGAGVMC APPPPAPGIY PHPPMAHMTY 360 PWMPCAPYVV KPQGSQVPLV PIPRLKPQQP TSAPKGKKSD SKKSEGKTKK VASISFLGLF 420 FFIMLFGGLV PLVDFKFGGL VDNVPDTGMS SFVSDRVYGQ GGGKVWSVNG PRNGSERDEE 480 VRFSNDRFSV KDKMNHERGR HLGEERGERE GPDNFGRQGN ASEPLVASLY VPRNDKMVKI 540 DGNLIIHSIM ASEKAMASQT ADAKEKRETG LAIPKDWDSA LAIPEVGRHP NVYRVPAEQR 600 KALASGSTKA LKDHMKSSAT DGKMQQWFRE GLAGPMLSSG MCTEVFQFDV SPSPGAIVPA 660 TSVSNVSTEK RQNATSVKKT RNRRTLRGLP DSLTGSSLNI TEEHVKNLDK NHLHGNESSM 720 VVSVLVDPKE VGDGDVDGMM RPKSLSRIFV VVLIDSVKYV TYSCGLPRAS PHLVTAYV*

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MTESMHAVEP SPEAAVLPVS DPLFDEFSTE FGSLPLLSID SLFNSDTLPF TSDLEFGMDF  60
DDNNGEFEIT FDDLDEICIP SDVEDFLLPD ACDPNNTSVL PPIDESSAKN SDSPRSDTSV  120
VSGDRSFGVS RFFNSQASDS VSEGNSCKEG SHDAADVRVS NISSPESEFC DREESSGGPV  180
SSQGSGNGGS GVCEAVNSPS PDSGSFERDI TSSHEHAVMD KGVKLEEISG CDLKRKKVSC  240
EGSATKHRRF SSSSVDTKTE KQTPSDVNAI DDDDEKRKAR LMRNRESAQL SRQRKKHYVE  300
ELEEKVRSMN SIIADLSSKI SYMVAENATL RQQVGAGVMC APPPPAPGIY PHPPMAHMTY  360
PWMPCAPYVV KPQGSQVPLV PIPRLKPQQP TSAPKGKKSD SKKSEGKTKK VASISFLGLF  420
FFIMLFGGLV PLVDFKFGGL VDNVPDTGMS SFVSDRVYGQ GGGKVWSVNG PRNGSERDEE  480
VRFSNDRFSV KDKMNHERGR HLGEERGERE GPDNFGRQGN ASEPLVASLY VPRNDKMVKI  540
DGNLIIHSIM ASEKAMASQT ADAKEKRETG LAIPKDWDSA LAIPEVGRHP NVYRVPAEQR  600
KALASGSTKA LKDHMKSSAT DGKMQQWFRE GLAGPMLSSG MCTEVFQFDV SPSPGAIVPA  660
TSVSNVSTEK RQNATSVKKT RNRRTLRGLP DSLTGSSLNI TEEHVKNLDK NHLHGNESSM  720
VVSVLVDPKE VGDGDVDGMM RPKSLSRIFV VVLIDSVKYV TYSCGLPRAS PHLVTAYV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	670	683	RQNATSVKKTRNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0204s00260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017440050.1	0.0	PREDICTED: bZIP transcription factor 17-like
TrEMBL	A0A0L9VHE5	0.0	A0A0L9VHE5_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RWV5	0.0	A0A0S3RWV5_PHAAN; Uncharacterized protein
STRING	XP_007162048.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7487	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	1e-161	bZIP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]