PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0203s00300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 25152.9 Da PI: 11.2517 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.8 | 5.2e-05 | 207 | 229 | 4 | 26 |
HHHHHHHHHHHHHHHHHHHHHCT CS HLH 4 ahnerErrRRdriNsafeeLrel 26 +h+ +Er RR++iN ++ L+el Vang0203s00300.1 207 SHSLAERARREKINARMKLLQEL 229 8******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.80.10.10 | 6.9E-23 | 10 | 129 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF08263 | 8.6E-5 | 16 | 43 | IPR013210 | Leucine-rich repeat-containing N-terminal, plant-type |
SuperFamily | SSF52058 | 6.43E-20 | 17 | 130 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS50888 | 10.08 | 203 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-4 | 206 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MTTTLVAAAD DAVMSNFLKS LKPPPPGWSQ TTSFCQWKGI QCDSSNRVTS ISLASKSLTG 60 TLPSDLNSLS QLRSLSLQDN ALSGPLPSLA QLSFLQTAYL NRNNFSAVPF AAFASLNSLQ 120 TLSLASNPFP HRSHLLHQPN RPRPRLCFPL CPCLLVKTQR RRGGMSALGR VRGSLKKSKS 180 VADETSVDSE KLPYVHVRVR RGQATDSHSL AERARREKIN ARMKLLQEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4hq1_A | 5e-21 | 9 | 129 | 27 | 147 | Probable receptor protein kinase TMK1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in auxin signal transduction and cell expansion and proliferation regulation (PubMed:23613767). May be involved in brassinosteroid-mediated plant growth and development via auxin regulation (PubMed:23921992). May be involved in microspore and pollen development (PubMed:23921992). {ECO:0000269|PubMed:23613767, ECO:0000269|PubMed:23921992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0203s00300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Initially up-regulated by exogenous auxin or brassinosteroid but down-regulated after a prolonged treatment. Down-regulated by abscisic acid, gibberellic acid or cytokinin. {ECO:0000269|PubMed:23921992}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413506.1 | 1e-74 | PREDICTED: receptor-like kinase TMK4 | ||||
Swissprot | Q9LK43 | 1e-31 | TMK4_ARATH; Receptor-like kinase TMK4 | ||||
TrEMBL | A0A0L9VIH3 | 1e-101 | A0A0L9VIH3_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA05G28350.1 | 5e-56 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.2 | 2e-21 | bHLH family protein |