PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang01g18960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 319aa MW: 35361.5 Da PI: 7.4728 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.1 | 4.8e-16 | 131 | 177 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Vang01g18960.1 131 FHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 177 5*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-20 | 124 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-20 | 124 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.765 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.41E-18 | 130 | 181 | No hit | No description |
Pfam | PF00010 | 1.8E-13 | 131 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-18 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
LISQLSSSMA GDMHQPQSSL GRTFPPNSED FSTFFNQLLH NPPTPGMDPN HSASDFTPNN 60 LNNNNPVPSS PSTFHFSQPH HYIPATDANT FKQHNNNHNP DFTSSSEKSV EATKPVPPPR 120 SSSKRSRAAE FHNLSEKRRR SRINEKMKAL QNLIPNSNKT DKASMLDEAI EYLKQLQLQV 180 QMLMMRNGLS LHPMSLPGEL RPVIMPQTGL NLDESDGLQN STSAIASSSN EESLVRHAFS 240 FPKQCSISDQ SHVVPSVTSL ATSNAPSTFH PSIKYFIVLI YVELNNSWCN MKDTLYNNMP 300 QLFMDAPKIG KNPSSDLS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang01g18960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-179 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429237.1 | 0.0 | PREDICTED: transcription factor ALC-like isoform X1 | ||||
TrEMBL | A0A0L9V1M4 | 0.0 | A0A0L9V1M4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RPW6 | 0.0 | A0A0S3RPW6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160864.1 | 1e-179 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2276 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36930.1 | 1e-29 | bHLH family protein |