PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g18900.4 | ||||||||
Common Name | LR48_Vigan07g269300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 124aa MW: 13899.6 Da PI: 6.9723 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.5 | 9.3e-15 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +k+g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Vang01g18900.4 2 RKWGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 44 46**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-25 | 1 | 53 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-28 | 1 | 58 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 1 | 52 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.35E-24 | 1 | 54 | No hit | No description |
SuperFamily | SSF54171 | 6.41E-18 | 2 | 53 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-8 | 2 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MRKWGKWVAE IREPNKRSRI WLGSYTTPVA AARAYDTAVF YLRGPSARLN FPELLFQDEV 60 DGANDDDSVN MSADSIRRKA TQVGARVDAL QTALHHHAPS HNPTLISLKP DLNEFPKLED 120 LQD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g18900.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429321.1 | 7e-88 | PREDICTED: ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q8LC30 | 3e-44 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A0L9V2Q5 | 1e-86 | A0A0L9V2Q5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RQD1 | 2e-86 | A0A0S3RQD1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160870.1 | 6e-84 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 1e-46 | related to AP2 1 |
Publications ? help Back to Top | |||
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