PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g18840.1

Common Name

LR48_Vigan07g269700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 277aa MW: 31187.2 Da PI: 6.593

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g18840.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	82.3	1e-25	9	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l pG+rF P++e l+ +yL+kk e+++ ++ ++ ike+++y+++P +Lp + +++++k+w+ ++ +++k+ ++r++ksg+W +g Vang01g18840.1 9 LFPGCRFYPSEEVLLGYYLTKKNENREqrFNGSDLIKELNLYDHDPFELPdAacfpyGYRGRKKHWFCYTVKETKS-----PSRKVKSGFWLRKG 98 579*****************9998855666678**********953777765555777888888887765.....689999**** PP NAM 88 kdkevlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128 + +++ ++ ++++ g++ +vfy g + +k+++tdW++ ey+l Vang01g18840.1 99 RVRDIRDNggiGNAVLGTRSRFVFYVGnSLKKATRTDWILYEYAL 143 ***98888888******874678899*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-30	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	33.262	9	159	IPR003441	NAC domain
Pfam	PF02365	7.5E-15	11	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEDRAQDALF PGCRFYPSEE VLLGYYLTKK NENREQRFNG SDLIKELNLY DHDPFELPDA 60 ACFPYGYRGR KKHWFCYTVK ETKSPSRKVK SGFWLRKGRV RDIRDNGGIG NAVLGTRSRF 120 VFYVGNSLKK ATRTDWILYE YALVDQILSS FVLCRVVNKP HHKNSPSEIG RSCCAEESAA 180 VVVRHIGVQH DGCVGGDDVC DNGYVNREIE AAENPIRRGG EHDHAATVSV AQGSQPVQER 240 LSGLPCDGAL YIEAVIPQQH MLSILEEDFI ELNDIV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-18	5	159	13	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-18	5	159	13	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-18	5	159	13	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-18	5	159	13	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-18	5	159	13	165	NAC domain-containing protein 19
4dul_B	4e-18	5	159	13	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g18840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429488.1	0.0	PREDICTED: NAC domain-containing protein 35-like
TrEMBL	A0A0L9V1U6	0.0	A0A0L9V1U6_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RPY1	0.0	A0A0S3RPY1_PHAAN; Uncharacterized protein
STRING	XP_007160867.1	1e-174	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13001	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32510.1	8e-23	NAC domain containing protein 11

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]