PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g18800.3 | ||||||||
Common Name | LR48_Vigan07g269100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 330aa MW: 38234.9 Da PI: 6.2062 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4.1e-05 | 92 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++++Lk+H + H Vang01g18800.3 92 YTCGVCGRKCKTHMDLKKHFKQlH 115 9******************98777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 9.1E-6 | 15 | 82 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.99 | 92 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 115 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 2.25E-12 | 106 | 247 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 9.1E-6 | 178 | 243 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MVKNSQGIYA PKSDKVVVLW DLDNKPPRGP PYNAAVSLKT LASRFGEVTD FSAYANRHAF 60 VHLPQWVLHE RRERRSLDIL ERKGVVTPSE PYTCGVCGRK CKTHMDLKKH FKQLHQRERE 120 KKLNRLKSLK GKKKRDRFKE RFLRGNHKYN EAARTLLVPK VGYGLAAELR RAGVFVKTVE 180 DKPQAADWAL KRQMVHSMSR GIDWLFLVSD DSDFSDMLRR AREADLGTVV VGDWDRALGR 240 HADLWVPWSG VENGEVELVP EMKKRREHGF LNDDDDDDHH DRGDWGGLNE DEELGQDFML 300 LHSEDEDEDE GNYYYDDEEE EEEDGLYIL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g18800.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429177.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108337215 | ||||
TrEMBL | A0A0L9V2B7 | 0.0 | A0A0L9V2B7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RPX6 | 0.0 | A0A0S3RPX6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160873.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-143 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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