PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g18800.2 | ||||||||
Common Name | LR48_Vigan07g269100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 380aa MW: 44089.5 Da PI: 6.7974 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 4.9e-05 | 142 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++++Lk+H + H Vang01g18800.2 142 YTCGVCGRKCKTHMDLKKHFKQlH 165 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 1.4E-5 | 91 | 132 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.99 | 142 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 144 | 165 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 2.04E-12 | 156 | 297 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 1.4E-5 | 228 | 293 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MNNSLFLHNA NAIHFTFHSA FSQTQRRHVA SNKHLSQRYP RIQCCCVEID MVKNSQGIYA 60 PKSDKVVVLW DLDNKPPRGP PYNAAVSLKT LASRFGEVTD FSAYANRHAF VHLPQWVLHE 120 RRERRSLDIL ERKGVVTPSE PYTCGVCGRK CKTHMDLKKH FKQLHQRERE KKLNRLKSLK 180 GKKKRDRFKE RFLRGNHKYN EAARTLLVPK VGYGLAAELR RAGVFVKTVE DKPQAADWAL 240 KRQMVHSMSR GIDWLFLVSD DSDFSDMLRR AREADLGTVV VGDWDRALGR HADLWVPWSG 300 VENGEVELVP EMKKRREHGF LNDDDDDDHH DRGDWGGLNE DEELGQDFML LHSEDEDEDE 360 GNYYYDDEEE EEEDGLYIL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g18800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429177.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108337215 | ||||
TrEMBL | A0A0L9V2B7 | 0.0 | A0A0L9V2B7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RPX6 | 0.0 | A0A0S3RPX6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160873.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6441 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-146 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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