PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g18800.1

Common Name

LR48_Vigan07g269100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 320aa MW: 36970.7 Da PI: 6.8512

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g18800.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	92	115	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++++Lk+H + H Vang01g18800.1 92 YTCGVCGRKCKTHMDLKKHFKQlH 115 9******************98777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	8.7E-6	15	82	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.99	92	120	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	94	115	IPR007087	Zinc finger, C2H2
CDD	cd06167	2.21E-12	106	247	No hit	No description
Gene3D	G3DSA:3.40.50.1010	8.7E-6	178	243	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MVKNSQGIYA PKSDKVVVLW DLDNKPPRGP PYNAAVSLKT LASRFGEVTD FSAYANRHAF 60 VHLPQWVLHE RRERRSLDIL ERKGVVTPSE PYTCGVCGRK CKTHMDLKKH FKQLHQRERE 120 KKLNRLKSLK GKKKRDRFKE RFLRGNHKYN EAARTLLVPK VGYGLAAELR RAGVFVKTVE 180 DKPQAADWAL KRQMVHSMSR GIDWLFLVSD DSDFSDMLRR AREADLGTVV VGDWDRALGR 240 HADLWVPWSG VENGEVELVP EMKKRREHGF LNDDDDDDHH DRGDWGGLNE DEELGQDFML 300 LHSEDEDEEE EEEDGLYIL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g18800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429177.1	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108337215
TrEMBL	A0A0L9V2B7	0.0	A0A0L9V2B7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RPX6	0.0	A0A0S3RPX6_PHAAN; Uncharacterized protein
STRING	XP_007160873.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-143	C2H2-like zinc finger protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]