PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18570.1
Common NameLR48_Vigan07g265900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 170aa    MW: 18570.3 Da    PI: 8.416
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.73.2e-272103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+l+ ++     +++q++++ +++k+FG++ ++++++++p+++r+++++sl++e++ r+ +Pv+Gavg++ +++++l+++
  Vang01g18570.1   2 SCNGCRVLRKGCSETCPLRSCLqwiesAESQRHATLFLAKFFGRTDLMSFIASVPQTRRPALFQSLLFEGCGRTVNPVNGAVGLLCSGNWHLCEA 96 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  Vang01g18570.1  97 AVETVLA 103
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.4181107IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-232101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCPLR SCLQWIESAE SQRHATLFLA KFFGRTDLMS FIASVPQTRR  60
PALFQSLLFE GCGRTVNPVN GAVGLLCSGN WHLCEAAVET VLAGGVLRAQ PDTVAGASTG  120
IRRPFRPLRL EHDAREMNEN SSSLMNRAEE PETVGYGGHK KNQILNLFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g18570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429962.11e-123PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE88e-60LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0L9V1I71e-122A0A0L9V1I7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RPV31e-122A0A0S3RPV3_PHAAN; Uncharacterized protein
STRINGGLYMA14G09750.21e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-62LOB domain-containing protein 39
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]