PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang01g18310.1 | ||||||||
Common Name | LR48_Vigan07g262500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 137aa MW: 16221.6 Da PI: 10.432 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.6 | 3.5e-10 | 50 | 94 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ rr+q+NR +ArrsR RKk +e+L++ + L eN++Lk++l Vang01g18310.1 50 RKLRRMQSNRDSARRSRWRKKRHLENLTNQANRLRMENRELKNRL 94 5789**************************************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-8 | 46 | 110 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.094 | 48 | 94 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.35E-10 | 50 | 102 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-8 | 50 | 102 | No hit | No description |
Pfam | PF00170 | 9.4E-8 | 50 | 94 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.64E-13 | 51 | 100 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MFFHEEAQPV LEIMFTPTEI EELFSLVNEP LSPESGSQEL NRVVRSTHER KLRRMQSNRD 60 SARRSRWRKK RHLENLTNQA NRLRMENREL KNRLCLTMHQ NLLLSLENER LRSESVTLMA 120 TLSNLYQILA TMISQQ* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang01g18310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429986.1 | 7e-93 | PREDICTED: bZIP transcription factor 2-like | ||||
TrEMBL | A0A0L9V1T9 | 2e-91 | A0A0L9V1T9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RPV2 | 2e-91 | A0A0S3RPV2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160935.1 | 8e-72 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5996 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22850.2 | 2e-16 | basic leucine-zipper 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|