PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18250.1
Common NameLR48_Vigan07g261900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 691aa    MW: 75623 Da    PI: 7.3268
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.1e-12338394155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Vang01g18250.1 338 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 394
                     78*******************77776664346655.77******************98 PP
2AP245.22.4e-14439488355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vang01g18250.1 439 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 488
                     9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.15E-19338402No hitNo description
SuperFamilySSF541712.35E-14338404IPR016177DNA-binding domain
PfamPF008471.3E-9338394IPR001471AP2/ERF domain
SMARTSM003807.6E-22339408IPR001471AP2/ERF domain
PROSITE profilePS5103217.359339402IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12339403IPR001471AP2/ERF domain
PRINTSPR003673.4E-6340351IPR001471AP2/ERF domain
CDDcd000184.33E-25437498No hitNo description
SuperFamilySSF541719.81E-18437498IPR016177DNA-binding domain
SMARTSM003804.9E-34438502IPR001471AP2/ERF domain
PROSITE profilePS5103219.282438496IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18438496IPR001471AP2/ERF domain
PfamPF008471.1E-9439488IPR001471AP2/ERF domain
PRINTSPR003673.4E-6478498IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MKSMNDGNAD DGNNHNWLGF SLSPHMKMEI TSSADPPHHH HHHFYHHPQV SAAAAPCNTV  60
PTGFYISPSH LNPSGICYGV GENGAFHPPL AMMPLKSDGS LCIMEALTRS QTPVYILRGF  120
CGLVEVMVPT TSPKLEDFLG GASMGAQEYG GHEREAMALS LDSVYYSSQN AEPEANRGHP  180
SSLGLLSDPF RQQTHPYYSG LGIYHVEEEA KQPHVTVCSS QMPQVVEEGV ACFKNWVPPR  240
GYSSTQQNPE QQQVNNSSGM GEGHGTSGNA GVGCGELQSL SLSMSPGSQS SCVTVPTQIS  300
SSRTESVAGD AKKRGSAKLG QKQPVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS  360
CKKEGQTRKG RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQTEL EEMKNMSRQE  420
YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD  480
VAAIKFRGVN AVTNFDISRY DVERIMASNT LLAGELARRN KESEPRTEAV EYNGVSSQQE  540
AETVNNNENN EKGSSDWKMG LYHQQQQQSN NNCDMKTMKC GNYRGSAFSV SLQDLIGIDS  600
VGSSQAMLEE STKIGAHFSN PSSLVTSLSS SREGSPDKTG PTMLFPKPPV GSKVVTSPIA  660
NGVSVSSWFP SQMRPVSMSH LPVFAAWSDT *
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g18250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428322.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-153CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0L9V1B30.0A0A0L9V1B3_PHAAN; Uncharacterized protein
STRINGXP_007160953.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-132AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]