PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g18210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 285aa MW: 32436.7 Da PI: 6.1123 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.1e-20 | 127 | 181 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F+++++++ ++++eLA+kl+L +rqV vWFqNrRa+ k Vang01g18210.1 127 RKKLRLTKEQSAILEETFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRARTK 181 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.3 | 2.3e-39 | 127 | 215 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq+++LEe+F+e+++L+p++K+ela +L+l++rqv+vWFqnrRARtk+kq+E+d++ Lk+++d+l+een+rL+keveeL++ Vang01g18210.1 127 RKKLRLTKEQSAILEETFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRARTKLKQTESDCDLLKKCCDSLTEENKRLQKEVEELKS 215 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.459 | 123 | 183 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.21E-18 | 124 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-18 | 125 | 187 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.3E-16 | 125 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.13E-16 | 126 | 184 | No hit | No description |
Pfam | PF00046 | 1.9E-17 | 127 | 181 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 158 | 181 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.8E-10 | 183 | 216 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.0E-18 | 183 | 227 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MYSVHSYSTS TTSDKILSHY SPYGYDDSKA NKRVENPSDC NKTYPSLTLG PPEDDDHDEV 60 KNDRPSSKTE SYEYFRAQVS SPSVVSSFSN SSSIKRERDQ ATGEEFDVDL ENVQTRVADA 120 DEDGNPRKKL RLTKEQSAIL EETFREHSTL NPKQKQELAM KLNLRTRQVE VWFQNRRART 180 KLKQTESDCD LLKKCCDSLT EENKRLQKEV EELKSMQAIS VPLYMQIPAA TLSLCPSCER 240 ICDSKSDDEN TNNNTSSLLF PSKTHHNHFY KSNYPFSHSS SAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 183 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g18210.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429481.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT9-like isoform X1 | ||||
Swissprot | A2XE76 | 1e-61 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 1e-61 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A0L9V2D0 | 0.0 | A0A0L9V2D0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RPN8 | 0.0 | A0A0S3RPN8_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA14G10370.1 | 1e-116 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-59 | homeobox from Arabidopsis thaliana |