PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g18120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9824.16 Da PI: 10.0515 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 8.9e-09 | 14 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 rg+W++eEd l+ +v+ +G+g +W + +++ g Vang01g18120.1 14 RGPWSPEEDATLKAYVESHGTGgNWIALPKKAG 46 89***********************99888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-18 | 5 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.01E-9 | 8 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.711 | 9 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-7 | 13 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-9 | 14 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.56E-6 | 16 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDATLKAYVE SHGTGGNWIA LPKKAGFSLF FPNTYSHFSN 60 TFFSFQTDND VKNYWNTKLK KKIMAGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g18120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-106 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429624.1 | 2e-35 | PREDICTED: transcription factor RAX2-like | ||||
Swissprot | Q9SJL7 | 1e-30 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A0S3RPK8 | 6e-34 | A0A0S3RPK8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A4D6MCD3 | 4e-34 | A0A4D6MCD3_VIGUN; Myb proto-oncogene protein | ||||
STRING | GLYMA14G10483.1 | 6e-33 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 5e-33 | MYB family protein |
Publications ? help Back to Top | |||
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