PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g17830.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 252aa    MW: 28122.8 Da    PI: 9.0246
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g17830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18178211134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+t++TplWR+gp g+k+LCnaCG+++rk +
  Vang01g17830.1 178 CSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKAR 211
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-18172223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.072172208IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-12172212No hitNo description
Gene3DG3DSA:3.30.50.102.6E-15176211IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.33E-14177232No hitNo description
PfamPF003202.0E-16178211IPR000679Zinc finger, GATA-type
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
LYSPLSITFS YFTSHFLSLF LSISMTPYSL HPPPPSLQPQ TQIFISSNNQ DCPTFFNIFD  60
PRKTIQIGGF TQSYQQDEKM VILHDGSSSN NLNSPEPVTV DPISSRNEGN LGSYKMDEED  120
IKHSDGSEKW MSSKMRLMKK MMRRSMSPTS DRLNPQGQES RYSQRSPRNT SSSTTRVCSD  180
CNTSTTPLWR SGPKGPKSLC NACGIRQRKA RRAMAEASNG LVTPINSKVF PRDEVAEAAM  240
LLMELSCGFV H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g17830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429446.11e-151PREDICTED: putative GATA transcription factor 22
TrEMBLA0A0S3RPP81e-149A0A0S3RPP8_PHAAN; Uncharacterized protein
STRINGXP_007161012.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.17e-17GATA family protein