PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g16740.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 290aa    MW: 32852.4 Da    PI: 5.3616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g16740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.8e-09159200955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r RR++i ++ +eL +l+P       +K++ ae+L  A +Y+k+Lq
  Vang01g16740.1 159 ARERRRKITNKTQELSKLVPGG-----TKMNTAEMLHAAAKYVKYLQ 200
                     699*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-12147210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.398150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-11154208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-8156204No hitNo description
SMARTSM003536.4E-10156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6160200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSLSKFFDWN TLQISDSEAS LRNEAMADEI APNIQHLFPY SDESFFLPNA LFEYCIDPND  60
GFIYPSDIHS PFDPFTSFPH HQIFPTHEDY NPLPCPKRQK FFCEEQPELL TTPTIPSNHI  120
DGFANCYSFQ SEERQPQFFC MDEEKGNKER VISPQSVAAR ERRRKITNKT QELSKLVPGG  180
TKMNTAEMLH AAAKYVKYLQ VQVEMLELMN SFEHEDKAAP PSEILHALVV SPFVQEKLYA  240
TVKEHAVRGA VYHLVLVSAK ELVELVAVAA TASHLVLLET KKCVPAMLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g16740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428959.10.0PREDICTED: transcription factor bHLH52-like
TrEMBLA0A0L9V2J51e-180A0A0L9V2J5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RQH61e-180A0A0S3RQH6_PHAAN; Uncharacterized protein
STRINGXP_007160660.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-20bHLH family protein