PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g16660.1 | ||||||||
Common Name | LR48_Vigan07g278900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 334aa MW: 35630.4 Da PI: 8.8636 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 94 | 116 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C++Cg++F+ ++L+ H+ + H Vang01g16660.1 94 ACSHCGEVFPKMESLELHQAVrH 116 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.829 | 93 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 93 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.88E-28 | 118 | 329 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.6E-18 | 120 | 329 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
VHDPSKGYSK IGSSCSSICS FRDVVHGNTR VVHRSDNSSP ESSSLGQETG LLTRKPVTAS 60 TRSTAAKSNA GTTYTSSSSS RGMQLPVARS TVCACSHCGE VFPKMESLEL HQAVRHAVSE 120 LGPEDSGRNI VEIIFKSSWL KKDNPICKIE RILKVHNTQR TIQRFEECRD TVKNRALGST 180 KKNPRCAADG NELLRFHCTT LTCALGARGS SSLCASVPGC GVCTIIRHGF QGGGGEHAKG 240 KGVRTTASSG RAHDSVVCGD GTRRAMLVCR VIAGRVKRVA EDTPPSEEEH VSVASYDSVA 300 GYAGIYSNLE ELVVFNPKAI LPCFVVIYKV PSC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g16660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502723.1 | 0.0 | uncharacterized protein LOC106763069 | ||||
TrEMBL | A0A1S3U9L1 | 0.0 | A0A1S3U9L1_VIGRR; uncharacterized protein LOC106763069 | ||||
STRING | XP_007160670.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10341 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-131 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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