PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g16450.2 | ||||||||
Common Name | LR48_Vigan07g281600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 28312.9 Da PI: 4.5915 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +kGVr++ +g+WvAeIr+p + r +r +lg++ t eAa a++ a+++l+g Vang01g16450.2 34 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTYETSVEAAMAYDCAARQLYG 83 69****999.**********8...3.35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.17E-28 | 33 | 93 | No hit | No description |
SMART | SM00380 | 1.5E-31 | 34 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.219 | 34 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-20 | 34 | 92 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-12 | 35 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-29 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MRMNASKQVK KSAKASSRKG CMRGKGGPEN ASCTFKGVRQ RTWGKWVAEI REPNRGARLW 60 LGTYETSVEA AMAYDCAARQ LYGSDAKLNL PDLAMALAFN FQFPPPSPQI PHMQPSPQLQ 120 HSQIPSPYDI FNLPSFDFIN NLTDDTNIMF NPVLSMPPQH AIADSAPVYA SDSHVAVPYE 180 NTTIPMAIHP SNPLEINEDT VDPFGGSFND IPDPMFDDSI WAEAARSLDF PLIPDAAGIN 240 EAETFLEVGP WDSLQTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 35 | 91 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-16 | 35 | 91 | 6 | 63 | ATERF1 |
3gcc_A | 1e-16 | 35 | 91 | 6 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g16450.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428963.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A0L9V2L6 | 0.0 | A0A0L9V2L6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RQG1 | 0.0 | A0A0S3RQG1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160709.1 | 1e-122 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-43 | ERF family protein |
Publications ? help Back to Top | |||
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