PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang01g16450.1 | ||||||||
Common Name | LR48_Vigan07g281600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 28802.5 Da PI: 4.5915 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +kGVr++ +g+WvAeIr+p + r +r +lg++ t eAa a++ a+++l+g Vang01g16450.1 39 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTYETSVEAAMAYDCAARQLYG 88 69****999.**********8...3.35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.28E-28 | 38 | 98 | No hit | No description |
PROSITE profile | PS51032 | 21.219 | 39 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-20 | 39 | 97 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-31 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 40 | 51 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-29 | 40 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-12 | 40 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MLTSGMRMNA SKQVKKSAKA SSRKGCMRGK GGPENASCTF KGVRQRTWGK WVAEIREPNR 60 GARLWLGTYE TSVEAAMAYD CAARQLYGSD AKLNLPDLAM ALAFNFQFPP PSPQIPHMQP 120 SPQLQHSQIP SPYDIFNLPS FDFINNLTDD TNIMFNPVLS MPPQHAIADS APVYASDSHV 180 AVPYENTTIP MAIHPSNPLE INEDTVDPFG GSFNDIPDPM FDDSIWAEAA RSLDFPLIPD 240 AAGINEAETF LEVGPWDSLQ TP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-17 | 40 | 96 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 9e-17 | 40 | 96 | 6 | 63 | ATERF1 |
3gcc_A | 9e-17 | 40 | 96 | 6 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang01g16450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428963.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A0L9V2L6 | 0.0 | A0A0L9V2L6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RQG1 | 0.0 | A0A0S3RQG1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160709.1 | 1e-125 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-43 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|