PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g15970.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 131aa    MW: 14927.9 Da    PI: 8.657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g15970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-09651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WTt   +++ +a + + ++   +W   ar +g g+t +++k ++ +
   Vang01g15970.1  6 VWTTKQNKKFENALAIYDKDtpdRWQNLARAVG-GKTVEEVKRHYEM 51
                     7********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.416262IPR017884SANT domain
SMARTSM007172.7E-7355IPR001005SANT/Myb domain
SuperFamilySSF466896.2E-12560IPR009057Homeodomain-like
PfamPF002498.7E-6652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-4759IPR009057Homeodomain-like
CDDcd001674.02E-6753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MASSSVWTTK QNKKFENALA IYDKDTPDRW QNLARAVGGK TVEEVKRHYE MLVDDLKQIE  60
EGRVPLPNYR KVAATEAGSI RGYSYMNEEQ RLKSNLINLL HINFASAMLQ NESCTDESPK  120
PQVKCKKETY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-30274678RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g15970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429899.14e-64PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S3UE754e-62A0A1S3UE75_VIGRR; protein RADIALIS-like 4
STRINGXP_007160753.15e-62(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.17e-36RAD-like 6