PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g15310.2
Common NameLR48_Vigan07g246400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 207aa    MW: 23712.2 Da    PI: 4.4036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g15310.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16250355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr +k +g+Wv+eIr p++   r r++lg+++t  +Aa+a +aa  +l+g
  Vang01g15310.2  2 YKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTQVKAARAFDAALYCLRG 50
                    9****999.**********933...5**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.246158IPR001471AP2/ERF domain
SMARTSM003807.0E-27164IPR001471AP2/ERF domain
PfamPF008471.5E-9250IPR001471AP2/ERF domain
PRINTSPR003671.3E-8213IPR001471AP2/ERF domain
CDDcd000184.82E-27260No hitNo description
SuperFamilySSF541715.49E-19259IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-28259IPR001471AP2/ERF domain
PRINTSPR003671.3E-82440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MYKGVRKRKW GKWVSEIRLP NSRERIWLGS YDTQVKAARA FDAALYCLRG KGASFNFPDT  60
PHLFEMESLK IPCSHQEIQE VAAKFANKVV EILAEEEEED GEVGVQSESM SDHTTHTETN  120
TTFPIYDGGT NNDVRVDQDT MDWTFMNMLD DLNGSDFGLY FEAEKGEFLC PTTHTPLLFH  180
NGDEIEVDDH DHDAFSNHSF LWSWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-152681579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g15310.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428911.11e-156PREDICTED: ethylene-responsive transcription factor ERF018-like
SwissprotQ9S7L55e-38ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A0L9V0V31e-155A0A0L9V0V3_PHAAN; Uncharacterized protein
STRINGXP_007161121.11e-100(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]