PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g14420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 327aa    MW: 37119.3 Da    PI: 9.4547
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g14420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.77.4e-56331601128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++k++++++++ ++i+ vd++k+ePwdLp k+k ++kewyfF  rd+ky+tg r+nrat++gyWk+tgkdke+l++
  Vang01g14420.1  33 LPPGFRFHPTDEELICYYLTNKISDSDFTA-KAIAVVDLNKCEPWDLPGKAKMGQKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNS 126
                     79*************************999.88***************999999***************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++elvg+kktLvfykgrap+gekt+Wvmheyr+
  Vang01g14420.1 127 vTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRI 160
                     89999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6329182IPR003441NAC domain
PROSITE profilePS5100560.25133182IPR003441NAC domain
PfamPF023655.7E-2934160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
LNPRKVFLSM QKDKEIVVEM EEGSHEKKKE ETLPPGFRFH PTDEELICYY LTNKISDSDF  60
TAKAIAVVDL NKCEPWDLPG KAKMGQKEWY FFNLRDRKYP TGVRTNRATN TGYWKTTGKD  120
KEILNSVTSE LVGMKKTLVF YKGRAPRGEK TNWVMHEYRI HSKSTFKITK QDEWVVCRVF  180
RKSGGAKKFP SNSNHSRTVN PYGVEVSPSV VPPPMMHLGD PSAHFNFLYG SRNYMMNPSE  240
FRATVSMAAT AHTQPLLRPM MAPPQPLSAH TVAQMNHDFS SNMVTPAALA AHSVDYGADM  300
TNANSHGNRF MGMDHCMDLD SYWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-573218816171NO APICAL MERISTEM PROTEIN
1ut4_B4e-573218816171NO APICAL MERISTEM PROTEIN
1ut7_A4e-573218816171NO APICAL MERISTEM PROTEIN
1ut7_B4e-573218816171NO APICAL MERISTEM PROTEIN
3swm_A4e-573218819174NAC domain-containing protein 19
3swm_B4e-573218819174NAC domain-containing protein 19
3swm_C4e-573218819174NAC domain-containing protein 19
3swm_D4e-573218819174NAC domain-containing protein 19
3swp_A4e-573218819174NAC domain-containing protein 19
3swp_B4e-573218819174NAC domain-containing protein 19
3swp_C4e-573218819174NAC domain-containing protein 19
3swp_D4e-573218819174NAC domain-containing protein 19
4dul_A4e-573218816171NAC domain-containing protein 19
4dul_B4e-573218816171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g14420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428887.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FLJ22e-77NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0S3RNM60.0A0A0S3RNM6_PHAAN; Uncharacterized protein
STRINGXP_007161322.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-106NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]