PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g14420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37119.3 Da PI: 9.4547 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.7 | 7.4e-56 | 33 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++k++++++++ ++i+ vd++k+ePwdLp k+k ++kewyfF rd+ky+tg r+nrat++gyWk+tgkdke+l++ Vang01g14420.1 33 LPPGFRFHPTDEELICYYLTNKISDSDFTA-KAIAVVDLNKCEPWDLPGKAKMGQKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNS 126 79*************************999.88***************999999***************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfykgrap+gekt+Wvmheyr+ Vang01g14420.1 127 vTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRI 160 89999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-63 | 29 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.251 | 33 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-29 | 34 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
LNPRKVFLSM QKDKEIVVEM EEGSHEKKKE ETLPPGFRFH PTDEELICYY LTNKISDSDF 60 TAKAIAVVDL NKCEPWDLPG KAKMGQKEWY FFNLRDRKYP TGVRTNRATN TGYWKTTGKD 120 KEILNSVTSE LVGMKKTLVF YKGRAPRGEK TNWVMHEYRI HSKSTFKITK QDEWVVCRVF 180 RKSGGAKKFP SNSNHSRTVN PYGVEVSPSV VPPPMMHLGD PSAHFNFLYG SRNYMMNPSE 240 FRATVSMAAT AHTQPLLRPM MAPPQPLSAH TVAQMNHDFS SNMVTPAALA AHSVDYGADM 300 TNANSHGNRF MGMDHCMDLD SYWPSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-57 | 32 | 188 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-57 | 32 | 188 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-57 | 32 | 188 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-57 | 32 | 188 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-57 | 32 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-57 | 32 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-57 | 32 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-57 | 32 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-57 | 32 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-57 | 32 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-57 | 32 | 188 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-57 | 32 | 188 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-57 | 32 | 188 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-57 | 32 | 188 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g14420.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428887.1 | 0.0 | PREDICTED: NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 2e-77 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0S3RNM6 | 0.0 | A0A0S3RNM6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161322.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5073 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-106 | NAC domain containing protein 38 |
Publications ? help Back to Top | |||
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