PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g13950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRAS | ||||||||
Protein Properties | Length: 637aa MW: 71638.3 Da PI: 5.8088 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 421.7 | 6e-129 | 270 | 627 | 2 | 361 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL+ecA+a+s+g+ e+a++++++l++++s +g+p qR+aay++e+Laar+a+s++ +y+al+++e + ss++laa+++++ev+P++kf+++ Vang01g13950.1 270 KQLLYECARALSEGNEEQAKSMINNLRQMVSIQGEPSQRIAAYMVEGLAARVASSGKCIYQALRCKEPP---SSDRLAAMQILFEVCPCFKFGFI 361 589*****************************************************************9...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN aI+eav e++vHiiDfdisqG+Q+++L+qaLas p+ p++R+Tgv++pe++ s ++ +g+rL+k+Aeelg++fef++ va++++ + Vang01g13950.1 362 AANGAIVEAVRDEKKVHIIDFDISQGTQYITLIQALASMPGRRPHVRLTGVDDPETVqrSVGGMNIIGKRLEKLAEELGLSFEFRA-VASKTSIV 455 *******************************************************99889999***********************.7******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++++L+++pgEal+Vn+++qlh++ de+vs+ +erd++L++vk l+Pk+v++veq++++n+++Fl+rf+ea +yysa+fd+l+a+lpres++r++ Vang01g13950.1 456 SPSMLNCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKCLNPKLVTIVEQDMNTNTSPFLQRFVEAYNYYSAVFDTLDATLPRESQDRMN 550 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 vEr++l+++ivn+vaceg++r+er e ++kWr+rl++aGF+p p+s+++ + ++ l+ + + d ++++ee+g+l +g Vang01g13950.1 551 VERQCLAKDIVNIVACEGEDRIERYEVAGKWRARLTMAGFTPCPMSTNVREAIRKLIITQYCDRFKIKEEKGALHFG 627 ***********************************************************99888********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.124 | 243 | 620 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-126 | 270 | 627 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
LPIIKFLCFL VKSLTRVSVS VSKSIIIIIL ICQKLHQRRH PRRFNEISSV SIHFTISQEL 60 ADASYRNAKL YTLKGTDVTP DLSSHNFVPD KHRNMYITDS YSSENYEKYF RDSPSEELIE 120 PSSSSISGNS VHPDSSYLLR ASSGASVIVN NPFDSRILST RHHNAYQSSF ESDFLENRSP 180 DGLDFDGEMR LKLQELEKAL FSDEEEEEED IFETAQIMDI DPDMAEWANP LQGMLLHDSP 240 KESSSSDSSN ISSISSTTKE TSQNSPQTPK QLLYECARAL SEGNEEQAKS MINNLRQMVS 300 IQGEPSQRIA AYMVEGLAAR VASSGKCIYQ ALRCKEPPSS DRLAAMQILF EVCPCFKFGF 360 IAANGAIVEA VRDEKKVHII DFDISQGTQY ITLIQALASM PGRRPHVRLT GVDDPETVQR 420 SVGGMNIIGK RLEKLAEELG LSFEFRAVAS KTSIVSPSML NCRPGEALVV NFAFQLHHMR 480 DETVSTVNER DQLLRMVKCL NPKLVTIVEQ DMNTNTSPFL QRFVEAYNYY SAVFDTLDAT 540 LPRESQDRMN VERQCLAKDI VNIVACEGED RIERYEVAGK WRARLTMAGF TPCPMSTNVR 600 EAIRKLIITQ YCDRFKIKEE KGALHFGYPV KVTLSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-62 | 275 | 628 | 25 | 367 | Protein SCARECROW |
5b3h_A | 2e-62 | 275 | 628 | 24 | 366 | Protein SCARECROW |
5b3h_D | 2e-62 | 275 | 628 | 24 | 366 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g13950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017430843.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_017430844.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A0L9V0V7 | 0.0 | A0A0L9V0V7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RNJ3 | 0.0 | A0A0S3RNJ3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161385.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4988 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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