PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g13710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 124aa MW: 14441.4 Da PI: 10.7584 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.8 | 1.8e-20 | 9 | 42 | 1 | 34 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krien+snrqvt+skR+ngilKKA+E+ vLCda+ Vang01g13710.1 9 KRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQ 42 79******************************97 PP | |||||||
2 | K-box | 13.3 | 3.5e-06 | 40 | 65 | 13 | 38 |
K-box 13 kaeslqqelakLkkeienLqreqRhl 38 +a++l+ e+++Lkke++++q e+R + Vang01g13710.1 40 DAQNLNGEIERLKKENDSMQIELRTR 65 4599****************999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-20 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.193 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-20 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-15 | 10 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEITVLCD AQNLNGEIER LKKENDSMQI 60 ELRTRSWRRR TGNLIFSGYQ QRLAVEGARE VENGFDQSVR DYNSHMPFAF RVQPMQPNLQ 120 ERI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g13710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090476 | 2e-69 | BT090476.1 Soybean clone JCVI-FLGm-4H15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014504222.1 | 1e-55 | floral homeotic protein GLOBOSA | ||||
Refseq | XP_017429903.1 | 1e-55 | PREDICTED: floral homeotic protein GLOBOSA-like | ||||
Refseq | XP_027939831.1 | 1e-55 | floral homeotic protein GLOBOSA-like | ||||
Swissprot | Q0HA25 | 3e-39 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A0L9V118 | 4e-55 | A0A0L9V118_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA14G24590.1 | 9e-55 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4355 | 32 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 7e-27 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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