PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g13410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 27996.2 Da PI: 6.061 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.6 | 1e-11 | 1 | 41 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ede l++++k+ G g+W+t +++ g+ R++k+c++rw +yl Vang01g13410.1 1 EDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 41 9************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.3 | 4.7e-15 | 52 | 92 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Vang01g13410.1 52 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 92 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 2.9E-9 | 1 | 41 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.66 | 1 | 41 | IPR017930 | Myb domain |
SMART | SM00717 | 0.13 | 1 | 43 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.08E-23 | 1 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.03E-7 | 1 | 41 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-16 | 1 | 48 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.686 | 42 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-13 | 46 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-23 | 49 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.7E-14 | 52 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.17E-12 | 52 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
EDEVLANYIK KEGEGRWRTL PKRAGLLRCG KSCRLRWMNY LRPSVKRGHI APDEEDLILR 60 LHRLLGNRWS LIAGRIPGRT DNEIKNYWNT HLRLHAIHHL GQHLQPPVSN PFDNNNISNQ 120 VAAVTDDVSA MGFMDSEDCN DDININYYSD DVFSSFLNSL INEDAFASQQ HHVQTELPSE 180 RCIPLPCDDR VDDPLVSITT ASTSQGYDDD LGVLWESPLV PSTTFTHHVN DPIIKMAHDH 240 HHHNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 1 | 93 | 14 | 105 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g13410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027939493.1 | 1e-141 | transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 1e-65 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A4D6MH61 | 1e-140 | A0A4D6MH61_VIGUN; Myb proto-oncogene protein | ||||
STRING | XP_007161463.1 | 1e-112 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3894 | 30 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 8e-64 | myb domain protein 5 |
Publications ? help Back to Top | |||
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