PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang01g11630.1 | ||||||||
Common Name | LR48_Vigan07g217000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 25409.2 Da PI: 4.4412 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.8e-18 | 31 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++kGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Vang01g11630.1 31 KKFKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 81 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.76E-18 | 31 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.3E-30 | 32 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-11 | 32 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-35 | 32 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-19 | 32 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.417 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MVKPEKKINT ESSKALSVSS SSAAASSENK KKFKGVRMRS WGSWVSEIRA PNQKTRIWLG 60 SYSTAEAAAR AYDAALLCLK GSSANLNFPS SSSSHYIPQD TVMSPKSIQR VAAAAANNFL 120 DTAIATTPSS PPLASTTSSS SLVSSPSISS SPSDQIDDDV SLLSPFGAYT PPPPSVNCDQ 180 ANESMAMMEY WYDLEELQSP KYVEQMLSGA FFDIDSTQLF DDLYEESDIS LWSFC* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang01g11630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429896.1 | 1e-170 | PREDICTED: ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | A0A0L9V0K8 | 1e-168 | A0A0L9V0K8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RN93 | 1e-168 | A0A0S3RN93_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141071.1 | 1e-111 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-31 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|