PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g11170.4
Common NameLR48_Vigan07g207800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 240aa    MW: 26285.2 Da    PI: 5.7997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g11170.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-194494155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Vang01g11170.4 44 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 94
                    68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-134494IPR001471AP2/ERF domain
PROSITE profilePS5103223.4245102IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2145103IPR016177DNA-binding domain
SMARTSM003801.8E-3645108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3245103IPR001471AP2/ERF domain
CDDcd000186.18E-3146104No hitNo description
PRINTSPR003672.4E-104657IPR001471AP2/ERF domain
PRINTSPR003672.4E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRVSARNDNS GKESRSTSPL SPSEEAPPSE SKPEKRNRDS NKHPVYRGVR MRNWGKWVSE  60
IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGNSAILN FPELAASLPR PVSLAPRDVQ  120
AAAAKAAHTD FRPSSTSLSS STSSLVSTTS SSSSLSSSVS TADLSAESEE LSQIIELPRL  180
ETSYELGKEF VFADSQDTWM YQPPIPWLQT TYDASQADDD IVVAETGLVN SFKSFLWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-19431031273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g11170.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429559.11e-172PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-70DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0L9V0T91e-171A0A0L9V0T9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RMX51e-171A0A0S3RMX5_PHAAN; Uncharacterized protein
STRINGXP_007161494.11e-128(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-69ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]