PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g10050.5 | ||||||||
Common Name | LR48_Vigan07g151400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 21757.5 Da PI: 7.1894 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.3e-21 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Vang01g10050.5 13 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 62 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.01E-33 | 12 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 13 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-37 | 13 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-23 | 13 | 71 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-14 | 14 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MKQVGGPPKP TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA LAYDKAAYRL 60 RGDFARLNFP NLKGSCLGEY KPLQSAVDAK LDAICQSLAE MPKQGKTEKG ARASSKKSKA 120 ARNPTQDPNP NLVCKAEPEL EPEAEPVLSP ESDGSVDSSP LSDLTFDVSE PQWEDASAYF 180 NLQKFPSYEI DWDSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 12 | 70 | 4 | 63 | ATERF1 |
3gcc_A | 2e-21 | 12 | 70 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g10050.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428974.1 | 1e-143 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 2e-70 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0L9UY65 | 1e-141 | A0A0L9UY65_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RMJ8 | 1e-141 | A0A0S3RMJ8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141161.1 | 1e-119 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-55 | related to AP2 4 |
Publications ? help Back to Top | |||
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