PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g10050.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 254aa    MW: 27976.5 Da    PI: 7.2557
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g10050.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.3e-2181130255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Vang01g10050.3  81 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 130
                     59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.15E-3480140No hitNo description
Gene3DG3DSA:3.30.730.101.9E-3281139IPR001471AP2/ERF domain
SMARTSM003803.1E-3781144IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2381139IPR016177DNA-binding domain
PROSITE profilePS5103223.10381138IPR001471AP2/ERF domain
PfamPF008472.5E-1482130IPR001471AP2/ERF domain
PRINTSPR003672.0E-118293IPR001471AP2/ERF domain
PRINTSPR003672.0E-11104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAATMDLYNG QPQVQSDPFR GELMEVLEPF MKSPSSTPSL SSDSIQAQMQ AQSQTSLSLN  60
FLGPKPVAMK QVGGPPKPTK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA  120
YDKAAYRLRG DFARLNFPNL KGSCLGEYKP LQSAVDAKLD AICQSLAEMP KQGKTEKGAR  180
ASSKKSKAAR NPTQDPNPNL VSEPVLSPES DGSVDSSPLS DLTFDVSEPQ WEDASAYFNL  240
QKFPSYEIDW DSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2180138160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g10050.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428974.11e-148PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ9LM153e-82RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0L9UY651e-147A0A0L9UY65_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RMJ81e-147A0A0S3RMJ8_PHAAN; Uncharacterized protein
STRINGXP_007141161.11e-135(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.15e-66ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  2. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]