PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g09960.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CO-like | ||||||||
Protein Properties | Length: 412aa MW: 45094.5 Da PI: 5.0891 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.1 | 1.2e-05 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++++ +C+++ +lC +C + H+ H++ Vang01g09960.2 5 CDFCGDQRSLVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 *****************************65667777765 PP | |||||||
2 | zf-B_box | 22.6 | 2.3e-07 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C++++++++ C +++ lC++C H + H++++ Vang01g09960.2 46 LLCERCNSQPAFVRCVEDKISLCQNCDWLAHGSsptsstHKRQT 89 68*************************99994488888888766 PP | |||||||
3 | CCT | 63 | 9e-22 | 354 | 397 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ Vang01g09960.2 354 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 397 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.471 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.0E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.98E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.2 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.07E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.12 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.8E-16 | 354 | 396 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.398 | 354 | 396 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGYLCDFCGD QRSLVYCRSD AACLCLSCDR NVHSANALSR RHSRSLLCER CNSQPAFVRC 60 VEDKISLCQN CDWLAHGSSP TSSTHKRQTI NCYSGCPSAA EFSSIWSFFL DIPSMGEACE 120 QELGLMSINE NGNKSDLVPP EGTNVSGSSQ VTDLPTKGKF WAGTSSIPVS DSEPRILDQL 180 PEPGNECMPK LNCPGKKISG ICEDDNLYDD FIMDEVDLEL ENYQELFGMA LSHSEELFEN 240 GGIESLFETK DMSASVGESH CHGAVAAEGS STGLVNAIQP ACSNAASVDS MLSTKTEPIV 300 CFTGRQSQSN ISFSGVTKDS AGDYQECDAS SMLLMGEPPW CPPCPESSLH SANRSNAVMR 360 YKEKKKTRKF EKKVRYASRK ARADVRRRVK GRFVKAGDVY DYDPLSQTRS Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g09960.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027940006.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_027940007.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_027940008.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_027940009.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_027940010.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-146 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A0S3R2P0 | 0.0 | A0A0S3R2P0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141372.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-119 | CONSTANS-like 9 |