PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g09310.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 362aa    MW: 39546.2 Da    PI: 6.6941
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g09310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.4e-17251284132
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                     C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ 
  Vang01g09310.1 251 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWAN 284
                     ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.23472107IPR010399Tify domain
SMARTSM009791.8E-1372107IPR010399Tify domain
PfamPF062007.4E-1473106IPR010399Tify domain
PROSITE profilePS5101712.302183225IPR010402CCT domain
PfamPF062034.2E-15183225IPR010402CCT domain
PROSITE profilePS501149.156245281IPR000679Zinc finger, GATA-type
SMARTSM004016.2E-12245312IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-10245287No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14249285IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.64E-13250285No hitNo description
PfamPF003209.2E-15251284IPR000679Zinc finger, GATA-type
PROSITE patternPS003440251278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEPPAMYGHS QPLNMPPQIS AAESNGSGPE PALDAHHHIH YETHALENGA AGAMVVVEDV  60
TSDAVYVSGG GGPEESSQLT LSFRGQVYVF DAVTPDKVQA VLLLLGGCEL SSSGSPCVDA  120
VPQQNQRVFS DNRRILYIIH TRLHLYRFTI DLLVTSPDAE YFVPPDIDKG SMEYPARCSL  180
PQRAASLDRF RKKRKERCFD KKVRYGVRQE VALRMHRNKG QFTSSKKQDG ANSYGTDQDS  240
GQDDSQSETS CTHCGTSSKS TPMMRRGPSG PRSLCNACGL FWANRVVVGV PPFDDVIVQG  300
ALRDLSKRNH EQSLVPVDDG NVSDCRTAAN PAHNNLAAYS EHDNPALVAD RKVFQSQKML  360
E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195RKKRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g09310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-162AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429060.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH68e-82GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A4D6MH370.0A0A4D6MH37_VIGUN; Pseudo-response regulator 1
STRINGXP_007141281.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.24e-72GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]