PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g08600.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 66aa MW: 7923.43 Da PI: 10.0234 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 51.9 | 2.2e-16 | 1 | 41 | 8 | 48 |
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 lrr+C+++C++apyfp ++ +kfa+vhk+FG +n++k+l+ Vang01g08600.9 1 LRRRCSQNCIFAPYFPPNDLHKFAMVHKVFGCKNLTKMLQV 41 69************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 4.7E-15 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 13.215 | 1 | 65 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
LRRRCSQNCI FAPYFPPNDL HKFAMVHKVF GCKNLTKMLQ VFMYNIYTSI FQKCNRADFI 60 YQMYK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g08600.9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-106 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428642.1 | 3e-23 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 3e-17 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0L9UXT4 | 6e-22 | A0A0L9UXT4_PHAAN; Uncharacterized protein | ||||
STRING | GRMZM2G025989_P01 | 9e-17 | (Zea mays) | ||||
STRING | XP_010045372.1 | 5e-17 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-19 | LBD family protein |
Publications ? help Back to Top | |||
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