PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g08600.3 | ||||||||
Common Name | LR48_Vigan07g106300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 117aa MW: 13072.4 Da PI: 8.9156 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105.3 | 5e-33 | 7 | 97 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C+++C++apyfp ++ +kfa+vhk+FG +n++k+l+ +++slvyeA+ar+r+PvyG+vg+i++l+ q+++l+++la Vang01g08600.3 7 PCASCKLLRRRCSQNCIFAPYFPPNDLHKFAMVHKVFGCKNLTKMLD---------IVKSLVYEANARVRNPVYGCVGLISNLEIQVSELQTQLA 92 7********************************************95.........69************************************* PP DUF260 96 llkee 100 ++++e Vang01g08600.3 93 VAQAE 97 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.382 | 6 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-32 | 7 | 95 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MSVNCSPCAS CKLLRRRCSQ NCIFAPYFPP NDLHKFAMVH KVFGCKNLTK MLDIVKSLVY 60 EANARVRNPV YGCVGLISNL EIQVSELQTQ LAVAQAEILT MKMQQEFTFN NGRISP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 6 | 99 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 6 | 99 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g08600.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-105 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428642.1 | 2e-79 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 7e-50 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0L9UXT4 | 5e-78 | A0A0L9UXT4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142160.1 | 9e-58 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-52 | LBD family protein |
Publications ? help Back to Top | |||
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