PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g08600.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 128aa    MW: 14754.3 Da    PI: 9.2508
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g08600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260958.1e-3011088100
          DUF260   8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.........peeer.........edamsslvyeAearardPvyGavgvilklq 84 
                     lrr+C+++C++apyfp ++ +kfa+vhk+FG +n++k+l+           +   +          d+++slvyeA+ar+r+PvyG+vg+i++l+
  Vang01g08600.1   1 LRRRCSQNCIFAPYFPPNDLHKFAMVHKVFGCKNLTKMLQVFmyniytsifQ---KcnradfiyqMDIVKSLVYEANARVRNPVYGCVGLISNLE 92 
                     69*************************************9874444443333...155599999899**************************** PP

          DUF260  85 qqleqlkaelallkee 100
                      q+++l+++la++++e
  Vang01g08600.1  93 IQVSELQTQLAVAQAE 108
                     ************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8441109IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-281106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
LRRRCSQNCI FAPYFPPNDL HKFAMVHKVF GCKNLTKMLQ VFMYNIYTSI FQKCNRADFI  60
YQMDIVKSLV YEANARVRNP VYGCVGLISN LEIQVSELQT QLAVAQAEIL TMKMQQEFTF  120
NNGRISP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-29111018112LOB family transfactor Ramosa2.1
5ly0_B6e-29111018112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g08600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-104AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428642.12e-67PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW32e-42LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0L9UXT45e-66A0A0L9UXT4_PHAAN; Uncharacterized protein
STRINGXP_007142160.11e-48(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.18e-45LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]