PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g08540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 137aa MW: 15185.7 Da PI: 8.0477 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136 | 1.4e-42 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C++dC+lapyfp+++ kfa+vhk+FG sn++k+lk++p e+r da++slvyeA+ar+r+PvyG+vg+i+kl+ q+++l+ +la Vang01g08540.1 20 PCASCKLLRRRCSPDCILAPYFPSNDLCKFAMVHKVFGCSNITKILKNVPVEQRGDAVRSLVYEANARIRNPVYGCVGIISKLETQVSELQMQLA 114 7********************************************************************************************** PP DUF260 96 llkee 100 +++ee Vang01g08540.1 115 VVEEE 119 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.238 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-42 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MLHAGQHRFL DFEMGGTSSP CASCKLLRRR CSPDCILAPY FPSNDLCKFA MVHKVFGCSN 60 ITKILKNVPV EQRGDAVRSL VYEANARIRN PVYGCVGIIS KLETQVSELQ MQLAVVEEEI 120 LSIKMQQEFI FTNGGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-40 | 16 | 121 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-40 | 16 | 121 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g08540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-116 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428643.1 | 1e-85 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 4e-55 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0L9UWX9 | 8e-86 | A0A0L9UWX9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142160.1 | 2e-72 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-57 | LBD family protein |
Publications ? help Back to Top | |||
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