PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g08240.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 344aa    MW: 38032.7 Da    PI: 7.4852
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g08240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.7e-15268304135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Vang01g08240.1 268 CRHCGISEkcTPMMRRGPEGPRTLCNACGLMWANKGT 304
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.624124159IPR010399Tify domain
SMARTSM009795.8E-11124159IPR010399Tify domain
PfamPF062001.6E-12128158IPR010399Tify domain
PROSITE profilePS5101713.205192234IPR010402CCT domain
PfamPF062037.7E-16192234IPR010402CCT domain
SMARTSM004014.3E-14262315IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.88262321IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-12263314No hitNo description
Gene3DG3DSA:3.30.50.106.3E-15266309IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.61E-14267323No hitNo description
PfamPF003202.2E-13268304IPR000679Zinc finger, GATA-type
PROSITE patternPS003440268295IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
LCRSTHNLQF LLGFIKLYHH ITRMFALFPN LFFVLSVAKC FTMDGIHGGD SRIHISDGQH  60
PIHVPYVQEH EHHGLHHMSN GNGIDEDQND GGDTNCGGSE SVEGDIPSSH GNLPDNHAVI  120
MDQGGDAGDQ LTLSFQGQVY VFDSVSPEKV QAVLLLLGGR EIPPTMPTMP VSPHHNNRGF  180
TGTPQKFSVP QRLASLIRFR EKRKERNFDK KIRYTVRKEV ALRMQRNKGQ FTSSKSNHDE  240
SASAATNWGP NENWSAENNG SQQQDIVCRH CGISEKCTPM MRRGPEGPRT LCNACGLMWA  300
NKGTLRDLSR AAPISGPIKN ENKSLETNQI VVHRVAGEAD DLS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g08240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430361.10.0PREDICTED: GATA transcription factor 28 isoform X1
SwissprotQ8H1G01e-134GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A4D6MHS70.0A0A4D6MHS7_VIGUN; Pseudo-response regulator 1
STRINGXP_007142122.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-137ZIM-LIKE 2