PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g08070.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 220aa    MW: 24789.1 Da    PI: 4.7282
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g08070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.34.5e-0967102139
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgta 39 
                     s+y+GV +++ +grW+A+I  +     +k+ +lg++  +
  Vang01g08070.1  67 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYAIE 102
                     89****99**********988422...5********874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.457132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-8233IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-8233IPR016177DNA-binding domain
SMARTSM003800.0076238IPR001471AP2/ERF domain
PfamPF008474.7E-567101IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-867115IPR016177DNA-binding domain
CDDcd000184.15E-1467115No hitNo description
PROSITE profilePS510329.4468108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-568108IPR001471AP2/ERF domain
SMARTSM003806.3E-968119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
LLGAYDDEEA AARAYDLAAL KYWGQDTILN FPLTNYEEKL KEMEGQSKEE YIGSLRRKSS  60
GFSRGVSKYR GVARHHHNGR WEARIGRVLG NKYLYLGTYA IEYRGANAVT NFDVSRYINW  120
PGPKSEEEHK NVAINENVNS NGDIELGFVS HEHGSITDEN TTEHVAQSTE SNPSRRTFPE  180
DIQTIFESQG PDIYTENDDI IFGDLGSFGA PIFHFELDV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g08070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429765.11e-148PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-72AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0S3RLF71e-147A0A0S3RLF7_PHAAN; Uncharacterized protein
STRINGXP_007142112.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.23e-72ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]