PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g07920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 744aa MW: 82274.1 Da PI: 6.3154 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 1.9e-23 | 140 | 241 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ Vang01g07920.1 140 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 230 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ Vang01g07920.1 231 KNQLLLGIRRA 241 9999****997 PP | |||||||
2 | Auxin_resp | 121.1 | 8.5e-40 | 266 | 349 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Vang01g07920.1 266 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 349 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-49 | 124 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 133 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-21 | 139 | 240 | No hit | No description |
Pfam | PF02362 | 9.3E-22 | 140 | 241 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-24 | 140 | 242 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.379 | 140 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.9E-35 | 266 | 349 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.7E-8 | 614 | 701 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.4E-7 | 615 | 691 | No hit | No description |
PROSITE profile | PS51745 | 24.155 | 617 | 701 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR 60 EVDGHIPNYP SLPPQLICQL HNVTMHVGII PSVLLAMIAD VETDEVYAQM TLQPLTPQEQ 120 KDTFLPMELG IPSKQPSNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL 180 IARDLHDVEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR 240 ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA ATNSCFTVFY NPRASPSEFV IPLSKYIKAV 300 YHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER 360 QPRVSLWEIE PLTTFPMYPS LFPLRLKRPW HPGTSSFHDG SYEATNGLMW LRGGPGDQGL 420 NSPSFQGSGL LPWMQQRMDP TLLGIDHNQQ YQAMFTSDFL DSSMKFPATV SPGQNMLSSL 480 CPEGSGSLLN LSRSGQSMLT EQQLPQQPWA PKFTPLQVNT FGNSMPHVQY SGKDTAMVSP 540 HCNSDTQNPI LFGVNIDSSG LLLPTTVPRY TTASADTDAS AMPLVESGFQ TPLYPCVQDS 600 SELLRSAGQV DPQNQTRTFV KVYKSGSVGR SLDISRFSSY HELREELAQM FGIEGKLEDP 660 LRSGWQLVFV DRENDVLLLG DDPWESFVNN VWYIKILSPE DIQKMGEQAV ESLGPSSGQR 720 LNSTGADSHE IVSGLPSIGS LEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-158 | 11 | 370 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g07920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023747631.1 | 0.0 | auxin response factor 8-like | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A151U9P4 | 0.0 | A0A151U9P4_CAJCA; Auxin response factor | ||||
STRING | Lus10010969 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |