PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang01g05410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 318aa MW: 34723.7 Da PI: 6.582 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00053 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Vang01g05410.1 166 FSCNYCKRKFFSSQALGGHQNAH 188 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.64E-6 | 164 | 193 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 166 | 193 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 168 | 188 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MSPISKQFLD DSESLNKGNG MWILPSNFVS SHQCLPRFAS TKICLSSQAS RVIFLSKLYI 60 MKPNFDLEVE AHAEYESEVS SQVASNVSIQ ETSIGPCSDS LTNISHTTNP IGSHPNSDAI 120 SLDLTLNFKN SEPGGRDSIG FSFSSTSESS NEPASQTTAA TISRVFSCNY CKRKFFSSQA 180 LGGHQNAHKR ERTLAKRALR MGFFSERYAN LASLPLHGSF RSLGVKAHSS LHHGFSPTMR 240 TPEIKSNARF DQGYVGIPIF LEDDESDLLW PGSFRQVVEA GDSHQNFILT GSSDLSFTGV 300 NPPVEIENST PDLTLKL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang01g05410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428255.1 | 0.0 | PREDICTED: zinc finger protein 4 | ||||
Refseq | XP_017428256.1 | 0.0 | PREDICTED: zinc finger protein 4 | ||||
Swissprot | Q39263 | 6e-51 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A0L9UX13 | 0.0 | A0A0L9UX13_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RL42 | 0.0 | A0A0S3RL42_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA14G39280.4 | 1e-167 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66140.1 | 3e-52 | zinc finger protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|