PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g05280.1
Common NameLR48_Vigan07g079800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 623aa    MW: 70661.5 Da    PI: 4.7814
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g05280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.26.1e-5751321128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v 
  Vang01g05280.1   5 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVN 98 
                     79****************************.99***************6434445667************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s k + vg+kktLv+y+grap+g++t+Wvmheyrl
  Vang01g05280.1  99 S-KARSVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 132
                     *.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-613137IPR003441NAC domain
PROSITE profilePS5100557.3525158IPR003441NAC domain
PfamPF023657.6E-316132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MAPVLPPGFR FHPTDEELVA YYLKRKINGR KIELEIIPEV DLYKCEPWDL PGKSLLPGKD  60
LEWYFFSPRD RKYPNGSRTN RATKSGYWKA TGKDRKVNSK ARSVGMKKTL VYYRGRAPHG  120
SRTNWVMHEY RLDETECETA SGLQITSDQS SSIELYSEGR GEDLVDSSNY FMSVDTCSPH  180
NVGTETPLTI SGGTTMDHVK WSHFSSQDSI FSLPTSSYPN FGAIAYPPSK VDIALECARM  240
QHRFVMPPLE VDDFPQVGIS ELKMTQASSS MQGSRTETDI LQEILSVAQA SQELINQSNN  300
SQDWCGNDYY APRDDDFAFM VGTNYNHSNE IMSSVRYVDK AWEDANTRTI EIGDMDEEFK  360
LERNVENLRW VGMSKEDLEK MEEQNIVPIE DISSFQTKMK ENEVQESEQH SNMEHNGTEI  420
NDFSLGFIND DDPTENLTED GNKDDYSSSP SFEVVEEIKV NRGMFVSTRQ VAETFFQQMV  480
PSQTVQVQLN TVMAHNHYVE NAEAMVLIME DQGSLRKVKA YVMGKLIKPS MTIASAIVFV  540
FALVLMHYAF IKGEVKFWNE TCCSNSDNIM KKTNLSCQIM NESNDVWFIG IKSGKGLSAV  600
LKKIGIFLTI FFALCAMWAN HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-56513215140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g05280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429367.10.0PREDICTED: NAC domain-containing protein 86-like
RefseqXP_017429368.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A0L9UX300.0A0A0L9UX30_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RL400.0A0A0S3RL40_PHAAN; Uncharacterized protein
STRINGXP_007141968.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-148NAC domain containing protein 28
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]