PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g05080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26659.9 Da PI: 7.056 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.7e-17 | 55 | 103 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a++ + + + Vang01g05080.1 55 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDLHAHRHH 103 59****999.**********954...5********************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.92E-24 | 55 | 96 | No hit | No description |
SuperFamily | SSF54171 | 3.6E-17 | 55 | 105 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-23 | 55 | 121 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-12 | 55 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.862 | 55 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-23 | 55 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010353 | Biological Process | response to trehalose | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0010896 | Biological Process | regulation of triglyceride catabolic process | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MASLQPQPQD TKPTVTTATP STPSLTSITS NHTTINNNTA RKCKGKGGPD NNKFRYRGVR 60 QRSWGKWVAE IREPRKRTRK WLGTFATAED AARAYDLHAH RHHHHRRPEE VVQVPHALST 120 SYPKSESDVS LDGNNTTVNS SSRSTSYQRH GFQDNNRLHV QHDHSSNHQQ HQKGDVDGVD 180 SVVGSAEGSQ ANMEASEDPD LSLVGTVGLG SSSSLWPLAS EDDYTDNLWD YNDPFFFDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-12 | 55 | 116 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g05080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429208.1 | 2e-89 | PREDICTED: ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A0L9UVU2 | 4e-88 | A0A0L9UVU2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RKG2 | 4e-88 | A0A0S3RKG2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141749.1 | 7e-67 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8847 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 9e-27 | ERF family protein |