PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g05030.1

Common Name

LR48_Vigan07g059200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 280aa MW: 31019.8 Da PI: 9.9743

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g05030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.2	6.9e-14	90	136	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +v+++k+L Vang01g05030.1 90 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVVDHVKDL 136 79***********************8.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.415	87	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-13	90	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-15	90	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.86E-11	90	139	No hit	No description
Pfam	PF00010	1.3E-11	90	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-11	93	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGNKRLTKPG TGIRIWSLIM HMESYHYSGW PLATNMAQCN SAPNSDRLSP FSVPTTQTPP 60 LASDPQSLQF TEFPLWPATI AEDRVASASK SHSQAEKRRR DRINAQLATL RKLIPKSDKM 120 DKAALLGSVV DHVKDLKRKA MCVSKGITVP SETDEVTIDF QEAEDESYKK VKKLKEKMII 180 KASVCCDDRP EVFPELIEVL KGLRLTAVKA DIASVGGRIK SILVLCSKDS EENSVCLSTL 240 KQSLKSAVNK IASLSVATNC PTRSKRQRFF FPSHYVQQP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g05030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429763.1	0.0	PREDICTED: transcription factor bHLH51-like
TrEMBL	A0A0L9UVU8	0.0	A0A0L9UVU8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RKL5	0.0	A0A0S3RKL5_PHAAN; Uncharacterized protein
STRING	XP_007141752.1	1e-177	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5796	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-44	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]