PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g03900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20699.1 Da PI: 6.154 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 3e-21 | 27 | 77 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr+++ +grW+AeIrdp+ r kr +lg+f+taeeAa +++a+ kl+g Vang01g03900.1 27 SKFRGVRQRP-WGRWAAEIRDPT----RrKRLWLGTFDTAEEAATEYDKAAVKLKG 77 79********.**********84....34************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.9E-65 | 4 | 183 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Pfam | PF00847 | 8.2E-14 | 27 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.70E-32 | 27 | 85 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-23 | 27 | 86 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-31 | 28 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-37 | 28 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.316 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MRQHHTCPIR KHALVHIRPA GTARRRSKFR GVRQRPWGRW AAEIRDPTRR KRLWLGTFDT 60 AEEAATEYDK AAVKLKGPNA VTNFPLTRPP PVESPFAAID SLSTDGGASY SDLVASPTSV 120 LTYDCDSTPF DSYHYGDVDA LGFHIDAPLS LADVDVSLTC HPYKEEEEAF DEFDLDEFMK 180 WPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 29 | 86 | 6 | 64 | ATERF1 |
3gcc_A | 4e-20 | 29 | 86 | 6 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g03900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429223.1 | 1e-117 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 3e-44 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A0L9UWA5 | 1e-115 | A0A0L9UWA5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RL61 | 1e-115 | A0A0S3RL61_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142025.1 | 1e-91 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-33 | cytokinin response factor 4 |