PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g03300.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 984aa    MW: 111297 Da    PI: 5.5736
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g03300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.2e-10433477246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+eEd  l+  v+  G ++W  Ia+ +g+ Rt+ qc sr+q 
   Vang01g03300.1 433 GAWTKEEDRSLLLIVQDTGIRNWFEIAASLGTSRTPFQCLSRFQR 477
                      79*****************************************96 PP
2Myb_DNA-binding409.2e-13487529346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd +l+ av+ +G g+W  +a+ +  +Rt+ qc +rw k
   Vang01g03300.1 487 EWTEEEDAQLYSAVTYFGDGNWQYVASVLE-RRTGTQCSNRWKK 529
                      7*****************************.***********98 PP
3Myb_DNA-binding41.43.3e-13536579146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eEd +l  av ++G + W+ Ia++++ gR   qc++r+++
   Vang01g03300.1 536 KGSFTQEEDMRLTVAVMLFGRK-WNQIAKYVP-GRIQSQCRDRYLN 579
                      799*****************99.*********.***********98 PP
4Myb_DNA-binding48.91.5e-15589630346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd++l  a++++G   W++Ia++++  Rt+ qc+ rw  
   Vang01g03300.1 589 GWTEEEDLRLEAAIAKHGYC-WSKIAEEVP-PRTDSQCRKRWKV 630
                      5*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.435326426IPR017877Myb-like domain
SMARTSM007171.6E-5330428IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-12333349IPR009057Homeodomain-like
CDDcd001670.00702389425No hitNo description
Gene3DG3DSA:1.10.10.602.1E-12399438IPR009057Homeodomain-like
SuperFamilySSF466891.41E-16409476IPR009057Homeodomain-like
PROSITE profilePS500909.767427479IPR017877Myb-like domain
SMARTSM007175.3E-9431481IPR001005SANT/Myb domain
CDDcd001678.62E-7434479No hitNo description
PfamPF139212.6E-14435496No hitNo description
Gene3DG3DSA:1.10.10.608.9E-14439490IPR009057Homeodomain-like
PROSITE profilePS5129416.715480535IPR017930Myb domain
SuperFamilySSF466892.97E-23483577IPR009057Homeodomain-like
SMARTSM007175.4E-7484533IPR001005SANT/Myb domain
CDDcd001674.10E-9487531No hitNo description
Gene3DG3DSA:1.10.10.601.0E-17491542IPR009057Homeodomain-like
SMARTSM007175.3E-13535583IPR001005SANT/Myb domain
PROSITE profilePS512949.66536581IPR017930Myb domain
PfamPF002493.1E-12536579IPR001005SANT/Myb domain
CDDcd001676.73E-8538581No hitNo description
Gene3DG3DSA:1.10.10.606.3E-19543588IPR009057Homeodomain-like
SuperFamilySSF466893.32E-23561634IPR009057Homeodomain-like
PROSITE profilePS5129424.616582636IPR017930Myb domain
SMARTSM007171.5E-13586634IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-17589632IPR009057Homeodomain-like
PfamPF002492.8E-14589630IPR001005SANT/Myb domain
CDDcd001673.93E-13590631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MTPRVDDFGN LSSTDDDDDD DGFKDDMAAL SRACRIVVPG AKDNSAAEDG VSSEDPPIDA  60
STATVSVATD SDSDGQDDLE CLKRVQSLYQ PLSVLPPLAP LALSDDDDDL DDLETVRAIM  120
RRFGDYNEGL REDGKKVLVE EDQTSSMGCE GDVANGSTHN ESDGGKLYPI SQDPKEAATE  180
ELIENIEMQL SEFVESSEPD DGESSRLPQK RLSFPPVVQC FIDAIKKNRD LQRFLRGKLI  240
ELEAKIEENK KIRNRIKILK DFQASCNRRT GNVLSLKKDP RVQLISAKKS SVPKKYKKQK  300
RVPAMCYGPE ENSHAANYRM VLERFPLSLD RKKWSKVERE NLLKGIKQQF QEMVLQLSLS  360
IDRTSSEELL READDMDNII ASVKDLEVTP ERIRKFLPKV NWDMIASMYA GGRTGAECES  420
RWLNYEDPLI NQGAWTKEED RSLLLIVQDT GIRNWFEIAA SLGTSRTPFQ CLSRFQRSLN  480
PSMLNSEWTE EEDAQLYSAV TYFGDGNWQY VASVLERRTG TQCSNRWKKS LCPEKKGSFT  540
QEEDMRLTVA VMLFGRKWNQ IAKYVPGRIQ SQCRDRYLNS LDPSLKWGGW TEEEDLRLEA  600
AIAKHGYCWS KIAEEVPPRT DSQCRKRWKV LCPDQVPLLQ EARKKQRSII SCNFVDRESE  660
RPTITLDDFM PLIALAPKSD IGASKLPKKR KSSNVSKKTS SKKRAKRTRR CAKEVQDTEV  720
YNDDEFYAES AYINLPKKNT RSKRHAKRSK ICPQELVDIS CSDKVETCIE GSENQSTCIA  780
NSENQDWDSM TLSSFIRNKS NEILSRFTKK LSQTSFSSRI TDVPEQVESQ NPSHDQSGSS  840
ESSDTVGTIN LFVPPNIVSD GRVRNREDTN ALTGDDNDDH MTLASFLGNK PKKKCQPKGH  900
HVCSSKLKTG SALLNEEHCA SKPTIISDDS GSMSYHVEAM ETVLHACVDK PMDTIVEEND  960
DELFTSHVQN RPRRERKRPS RFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-294016287155MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-294016287155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1684690KLPKKRK
2970975RPRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g03300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427887.10.0PREDICTED: uncharacterized protein LOC108336080
TrEMBLA0A0S3T0F60.0A0A0S3T0F6_PHAAN; Uncharacterized protein
STRINGXP_007153075.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-161myb domain protein 4r1