PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g02950.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 443aa MW: 50615.9 Da PI: 9.0373 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 78 | 97 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cg +F+ + +L +H++ Vang01g02950.3 78 TCEECGVTFKKHAYLLQHMQ 97 6******************7 PP | |||||||
2 | zf-C2H2 | 18.1 | 7.6e-06 | 160 | 184 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC+ s++rk++L+rH+ +H Vang01g02950.3 160 FVCTvdDCHASYRRKDHLTRHLLLH 184 89********************998 PP | |||||||
3 | zf-C2H2 | 13.3 | 0.00025 | 189 | 214 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ Fs + n++rH H Vang01g02950.3 189 FKCPvvNCNIEFSLQGNMQRHVEEiH 214 89*******************98777 PP | |||||||
4 | zf-C2H2 | 17.5 | 1.1e-05 | 229 | 253 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk F+ s+Lk+H +H Vang01g02950.3 229 HVCPeiGCGKGFRFASQLKKHEDSH 253 79*******************9888 PP | |||||||
5 | zf-C2H2 | 13.9 | 0.00016 | 347 | 372 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+ +Fs ksnL +H + H Vang01g02950.3 347 FQCEfkGCSCTFSKKSNLDKHKKAvH 372 89*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 28 | 33 | 56 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 26 | 77 | 97 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-9 | 157 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.98E-6 | 158 | 186 | No hit | No description |
PROSITE profile | PS50157 | 10.221 | 160 | 189 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 160 | 184 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 162 | 184 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 187 | 215 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.42E-5 | 187 | 215 | No hit | No description |
PROSITE profile | PS50157 | 10.159 | 189 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0054 | 189 | 214 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 191 | 214 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-6 | 223 | 253 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.034 | 229 | 253 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 229 | 253 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 231 | 253 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.92 | 288 | 313 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 289 | 313 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 290 | 313 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 35 | 316 | 337 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.9E-7 | 328 | 369 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.52E-9 | 331 | 386 | No hit | No description |
PROSITE profile | PS50157 | 13.609 | 347 | 377 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 347 | 372 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 349 | 372 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 371 | 401 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.7 | 378 | 404 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 380 | 404 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
LHSSICSLYL ITKTMVEAVT IEERPKSRDI RRYFCQYCGI CRSKKTLITS HINSQHKEED 60 EKARKETDPE TESSKSNTCE ECGVTFKKHA YLLQHMQNSK IIGKLWINSV KHWIPDNELQ 120 NARGNEFRLD GSVSGRETSC EAPSRMPQSR SLNLRLARPF VCTVDDCHAS YRRKDHLTRH 180 LLLHEGKTFK CPVVNCNIEF SLQGNMQRHV EEIHDGSSTA AADKSHKQHV CPEIGCGKGF 240 RFASQLKKHE DSHGRLFFLG FIYELVNPVG YNFEESLYHA VKLESIEVVC LEPGCMKHFA 300 NVQGLRAHVN TSHQYMTCDI CGSKQLKKNI KRHLRSHEAD SSSSKTFQCE FKGCSCTFSK 360 KSNLDKHKKA VHLKEKPFRC GFPDCGMRFA YKHVRDNHEK TAKHVFTLVS SFSFWVILKK 420 LMQNSGQGRG EGGRENVLLL KC* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g02950.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429048.1 | 0.0 | PREDICTED: transcription factor IIIA | ||||
TrEMBL | A0A0L9UUX0 | 0.0 | A0A0L9UUX0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RJL2 | 0.0 | A0A0S3RJL2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142319.1 | 1e-140 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 2e-93 | transcription factor IIIA |