PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g02790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 108aa MW: 12294.2 Da PI: 6.2224 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 29.6 | 1.9e-09 | 12 | 56 | 57 | 101 |
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 m +++ + r++dPvyG+vg+i+kl +q+++++ ela++++++ Vang01g02790.1 12 SMVAVMLGKCFRIQDPVYGCVGIISKLYEQIHNTEIELAQIQTQI 56 6788888899*****************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.4E-6 | 12 | 53 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MILKDLLLFT KSMVAVMLGK CFRIQDPVYG CVGIISKLYE QIHNTEIELA QIQTQITCHK 60 LQLLHPNNAE TNFNLLPTAE AQSNFQIPPE SNNPPQFQWP NQVPWFN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g02790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-142 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428476.1 | 1e-56 | PREDICTED: LOB domain-containing protein 24-like | ||||
TrEMBL | A0A0L9UVH4 | 2e-55 | A0A0L9UVH4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RJM4 | 2e-55 | A0A0S3RJM4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142295.1 | 6e-38 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 8e-10 | LOB domain-containing protein 31 |