PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g02400.3
Common NameLR48_Vigan07g018500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 167aa    MW: 19211.8 Da    PI: 9.6967
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g02400.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Vang01g02400.3 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box67.25.5e-23751333492
           K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                     ++Rh+lGe L+sLslkeL++Le++Lek+l+++Rs+K+e l++ ie +qk+++++ +  +
  Vang01g02400.3  75 NNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKRQHMTGNVCE 133
                     78*************************************************99887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.9551777IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-401776IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-301877IPR002100Transcription factor, MADS-box
CDDcd002652.40E-381876No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-331939IPR002100Transcription factor, MADS-box
PfamPF003195.2E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-335475IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.83355167IPR002487Transcription factor, K-box
PfamPF014868.7E-1774133IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEFPNEAISE GCSQKKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVVFSSRGRL YEYANNRHIL GEALSSLSLK ELKNLESRLE KGLSRVRSRK HETLFADIEF  120
MQKRQHMTGN VCESLPASQS YDRNFFPVNL IDSSHQYSRQ DHTALQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-201876260Myocyte-specific enhancer factor 2B
1tqe_Q6e-201876260Myocyte-specific enhancer factor 2B
1tqe_R6e-201876260Myocyte-specific enhancer factor 2B
1tqe_S6e-201876260Myocyte-specific enhancer factor 2B
6c9l_A6e-201876260Myocyte-specific enhancer factor 2B
6c9l_B6e-201876260Myocyte-specific enhancer factor 2B
6c9l_C6e-201876260Myocyte-specific enhancer factor 2B
6c9l_D6e-201876260Myocyte-specific enhancer factor 2B
6c9l_E6e-201876260Myocyte-specific enhancer factor 2B
6c9l_F6e-201876260Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g02400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-126AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431080.11e-107PREDICTED: agamous-like MADS-box protein AGL5
RefseqXP_017431081.11e-107PREDICTED: agamous-like MADS-box protein AGL5
RefseqXP_017431082.11e-107PREDICTED: agamous-like MADS-box protein AGL5
SwissprotQ93XH45e-68MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A0L9UUU31e-105A0A0L9UUU3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJK91e-105A0A0S3RJK9_PHAAN; Uncharacterized protein
STRINGGLYMA14G03100.11e-93(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.22e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]